Transcript: lnc-SRSF6-3:3

Basic information

LNCipedia transcript ID: lnc-SRSF6-3:3 
LNCipedia gene ID: lnc-SRSF6-3
Ensembl Gene ID: ENSG00000229042
Ensembl Transcript ID: ENST00000457704
RefSeq ID: NR_110004
Location (hg38): chr20:42685483-42688562
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1995 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT079804; NR_110004; ENST00000457704.2; NR_110004.1
Alternative gene names: ENSG00000229042.2; RP1-232N11.2; AL031656.1; LOC101927159


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -136.7962 non-coding 
CPAT coding probability 8.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SRSF6-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SRSF6-3:3
4.0 lnc-SRSF6-3:3
4.1 lnc-SRSF6-3:3
5.0 lnc-SRSF6-3:3
5.1 lnc-STK4-76:3
5.2 lnc-SRSF6-3:3