Transcript: lnc-SRY-5:1

Basic information

LNCipedia transcript ID: lnc-SRY-5:1 
LNCipedia gene ID: lnc-SRY-5
Location (hg38): chrY:1397025-1399402
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 370 bp
Exons: 3
Sources: Broad Institute; Gencode v13; NONCODE v4
Alternative transcript names: TCONS_00017618; ENSTR0000430235.1; LINC00106-001; OTTHUMT00000055604.1; NONHSAT139267
Alternative gene names: XLOC_008306; linc-SLC25A6-1; ENSGR0000236871.1; LINC00106; OTTHUMG00000021061.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.9173 non-coding 
CPAT coding probability 2.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SRY-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SRY-2:1
3.1 lnc-SRY-5:1
4.0 lnc-SRY-5:1
4.1 lnc-SRY-5:1
5.0 lnc-SRY-5:1
5.1 lnc-DAZ1-160:1
5.2 lnc-SRY-5:1