Transcript: lnc-SSH3-5:1

Basic information

LNCipedia transcript ID: lnc-SSH3-5:1 
LNCipedia gene ID: lnc-SSH3-5
Location (hg38): chr11:67353583-67359395
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 5813 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT022409
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.3639 non-coding 
CPAT coding probability 35.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SSH3-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RAD9A-4:2
4.0 lnc-RAD9A-4:2
4.1 lnc-RAD9A-4:2
5.0 lnc-RAD9A-4:2
5.1 lnc-GSTP1-22:2
5.2 lnc-SSH3-5:1