Transcript: lnc-SSH3-5:2

Basic information

LNCipedia transcript ID: lnc-SSH3-5:2 
LNCipedia gene ID: lnc-SSH3-5
Ensembl Gene ID: ENSG00000274251
Ensembl Transcript ID: ENST00000613900
Location (hg38): chr11:67353629-67354348
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 527 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000613900.1
Alternative gene names: ENSG00000274251.1; CTC-1337H24.3; AP003419.3; AP003419.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -18.5466 non-coding 
CPAT coding probability 1.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SSH3-5:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RAD9A-4:3
4.1 lnc-RAD9A-4:3
5.0 lnc-RAD9A-4:3
5.1 lnc-GSTP1-22:3
5.2 lnc-SSH3-5:2