Transcript: lnc-SSTR5-1:1

Basic information

LNCipedia transcript ID: lnc-SSTR5-1:1 
LNCipedia gene ID: lnc-SSTR5-1
Ensembl Gene ID: ENSG00000261720
Ensembl Transcript ID: ENST00000564390
Location (hg38): chr16:1065240-1066502
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 879 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564390.1; RP11-161M6.5-001; OTTHUMT00000420788.1; NONHSAT051912
Alternative gene names: ENSG00000261720.1; RP11-161M6.5; OTTHUMG00000172832.1; AC009041.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.9179 non-coding 
CPAT coding probability 3.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SSTR5-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SSTR5-1:1
4.0 lnc-SSTR5-1:1
4.1 lnc-SSTR5-1:1
5.0 lnc-SSTR5-1:1
5.1 lnc-DNASE1L2-76:1
5.2 lnc-SSTR5-1:1