Transcript: lnc-SSTR5-2:2

Basic information

LNCipedia transcript ID: lnc-SSTR5-2:2 
LNCipedia gene ID: lnc-SSTR5-2
Location (hg38): chr16:1111225-1113399
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1759 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT051919
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.3634 non-coding 
CPAT coding probability 49.14% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SSTR5-2:2 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SSTR5-2:2
4.0 lnc-SSTR5-2:2
4.1 lnc-SSTR5-2:2
5.0 lnc-SSTR5-2:2
5.1 lnc-DNASE1L2-75:1
5.2 lnc-SSTR5-2:2