Transcript: lnc-SSU72P5-2:7

Basic information

LNCipedia transcript ID: lnc-SSU72P5-2:7 
LNCipedia gene ID: lnc-SSU72P5-2
RefSeq ID: NR_047550
Location (hg38): chr11:4187152-4202653
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 448 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_047550; NR_047550.1
Alternative gene names: LOC100506082


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -57.2718 non-coding 
CPAT coding probability 1.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SSU72P5-2:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RRM1-2:4
4.0 lnc-RRM1-2:4
4.1 lnc-RRM1-2:4
5.0 lnc-RRM1-2:4
5.1 lnc-OR51M1-22:7
5.2 lnc-SSU72P5-2:7