Transcript: lnc-ST3GAL4-53:2

Basic information

LNCipedia transcript ID: lnc-ST3GAL4-53:2 
LNCipedia gene ID: lnc-ST3GAL4-53
Ensembl Gene ID: ENSG00000272642
Ensembl Transcript ID: ENST00000609845
Location (hg38): chr11:127190769-127223449
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 414 bp
Exons: 5
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609845.1
Alternative gene names: ENSG00000272642.1; CTD-2234N14.1; AP003121.1; ENSG00000272642.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -98.7543 non-coding 
CPAT coding probability 4.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ST3GAL4-53:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-168K9.2.1-5:1
4.0 lnc-RP11-168K9.2.1-5:1
4.1 lnc-RP11-168K9.2.1-5:1
5.0 lnc-RP11-168K9.2.1-5:1
5.1 lnc-JAM3-53:2
5.2 lnc-ST3GAL4-53:2