Transcript: lnc-ST3GAL4-55:11

Basic information

LNCipedia transcript ID: lnc-ST3GAL4-55:11 
LNCipedia gene ID: lnc-ST3GAL4-55
Location (hg38): chr11:127035562-127073300
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 778 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00020020
Alternative gene names: XLOC_009323; linc-FLI1-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.0173 non-coding 
CPAT coding probability 0.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ST3GAL4-55:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-168K9.2.1-2:7
3.1 lnc-RP11-168K9.2.1-2:7
4.0 lnc-RP11-168K9.2.1-2:7
4.1 lnc-RP11-168K9.2.1-2:7
5.0 lnc-RP11-168K9.2.1-2:7
5.1 lnc-JAM3-55:11
5.2 lnc-ST3GAL4-55:11