Transcript: lnc-ST3GAL4-55:12

Basic information

LNCipedia transcript ID: lnc-ST3GAL4-55:12 
LNCipedia gene ID: lnc-ST3GAL4-55
RefSeq ID: NR_120578
Location (hg38): chr11:127067002-127101306
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2323 bp
Exons: 3
Sources: Broad Institute; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00019114; NR_120578; NR_120578.1
Alternative gene names: XLOC_009323; linc-FLI1-4; LOC101929473


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.468 non-coding 
CPAT coding probability 16.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ST3GAL4-55:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-168K9.2.1-2:8
3.1 lnc-RP11-168K9.2.1-2:8
4.0 lnc-RP11-168K9.2.1-2:8
4.1 lnc-RP11-168K9.2.1-2:8
5.0 lnc-RP11-168K9.2.1-2:8
5.1 lnc-JAM3-55:12
5.2 lnc-ST3GAL4-55:12