Transcript: lnc-ST3GAL4-55:13

Basic information

LNCipedia transcript ID: lnc-ST3GAL4-55:13 
LNCipedia gene ID: lnc-ST3GAL4-55
Location (hg38): chr11:127067002-127101317
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2334 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000527317.1; RP11-168K9.2-001; OTTHUMT00000386316.1; NONHSAT025051
Alternative gene names: ENSG00000255087.1; RP11-168K9.2; OTTHUMG00000165811.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.468 non-coding 
CPAT coding probability 16.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ST3GAL4-55:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-168K9.2.1-2:9
4.0 lnc-RP11-168K9.2.1-2:9
4.1 lnc-RP11-168K9.2.1-2:9
5.0 lnc-RP11-168K9.2.1-2:9
5.1 lnc-JAM3-55:13
5.2 lnc-ST3GAL4-55:13