Transcript: lnc-ST3GAL4-55:16

Basic information

LNCipedia transcript ID: lnc-ST3GAL4-55:16 
LNCipedia gene ID: lnc-ST3GAL4-55
Location (hg38): chr11:127080434-127099579
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 614 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020023; NONHSAT025053
Alternative gene names: XLOC_009323; linc-FLI1-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.9922 non-coding 
CPAT coding probability 17.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ST3GAL4-55:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-168K9.2.1-2:9
3.1 lnc-RP11-168K9.2.1-2:10
4.0 lnc-RP11-168K9.2.1-2:10
4.1 lnc-RP11-168K9.2.1-2:10
5.0 lnc-RP11-168K9.2.1-2:10
5.1 lnc-JAM3-55:16
5.2 lnc-ST3GAL4-55:16