Transcript: lnc-ST3GAL4-55:18

Basic information

LNCipedia transcript ID: lnc-ST3GAL4-55:18 
LNCipedia gene ID: lnc-ST3GAL4-55
Ensembl Gene ID: ENSG00000255087
Ensembl Transcript ID: ENST00000609688
Location (hg38): chr11:127119326-127139735
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 561 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609688.1
Alternative gene names: ENSG00000272981.1; CTD-2234N14.2; AP001993.2; ENSG00000255087.3; AP001993.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -293.3286 non-coding 
CPAT coding probability 1.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ST3GAL4-55:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-168K9.2.1-4:1
4.0 lnc-RP11-168K9.2.1-4:1
4.1 lnc-RP11-168K9.2.1-4:1
5.0 lnc-RP11-168K9.2.1-4:1
5.1 lnc-JAM3-55:18
5.2 lnc-ST3GAL4-55:18