Transcript: lnc-ST3GAL4-55:3

Basic information

LNCipedia transcript ID: lnc-ST3GAL4-55:3 
LNCipedia gene ID: lnc-ST3GAL4-55
Location (hg38): chr11:127021754-127053553
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 572 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000530177; ENST00000530177.1; RP11-168K9.1-001; OTTHUMT00000386315.1; NONHSAT140042
Alternative gene names: ENSG00000255546; RP11-168K9.1; ENSG00000255546.1; OTTHUMG00000165810.1; AP001973.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.0173 non-coding 
CPAT coding probability 0.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ST3GAL4-55:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-168K9.2.1-2:1
3.1 lnc-RP11-168K9.2.1-2:1
4.0 lnc-RP11-168K9.2.1-2:1
4.1 lnc-RP11-168K9.2.1-2:1
5.0 lnc-RP11-168K9.2.1-2:1
5.1 lnc-JAM3-55:3
5.2 lnc-ST3GAL4-55:3