Transcript: lnc-ST3GAL4-9:1

Basic information

LNCipedia transcript ID: lnc-ST3GAL4-9:1 
LNCipedia gene ID: lnc-ST3GAL4-9
Location (hg38): chr11:127055732-127056530
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 674 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020022; NONHSAT025050
Alternative gene names: XLOC_009324; linc-FLI1-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -126.373 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ST3GAL4-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-168K9.2.1-1:1
3.1 lnc-RP11-168K9.2.1-1:1
4.0 lnc-RP11-168K9.2.1-1:1
4.1 lnc-RP11-168K9.2.1-1:1
5.0 lnc-RP11-168K9.2.1-1:1
5.1 lnc-JAM3-54:1
5.2 lnc-ST3GAL4-9:1