Transcript: lnc-ST3GAL6-1:2

Basic information

LNCipedia transcript ID: lnc-ST3GAL6-1:2 
LNCipedia gene ID: lnc-ST3GAL6-1
Ensembl Gene ID: ENSG00000239462
Ensembl Transcript ID: ENST00000474798
Location (hg38): chr3:98902424-99018562
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 395 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000474798.1; CTD-2021J15.1-001; OTTHUMT00000353103.1; NONHSAT090832
Alternative gene names: ENSG00000239462.1; CTD-2021J15.1; OTTHUMG00000159061.1; AC091212.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -200.5975 non-coding 
CPAT coding probability 1.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ST3GAL6-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ST3GAL6-1:2
4.0 lnc-ST3GAL6-1:2
4.1 lnc-ST3GAL6-1:2
5.0 lnc-ST3GAL6-1:2
5.1 lnc-OR5K4-14:5
5.2 lnc-ST3GAL6-1:2