Transcript: lnc-ST6GALNAC3-1:1

Basic information

LNCipedia transcript ID: lnc-ST6GALNAC3-1:1 
LNCipedia gene ID: lnc-ST6GALNAC3-1
Ensembl Gene ID: ENSG00000230027
Ensembl Transcript ID: ENST00000434540
Location (hg38): chr1:76041691-76066228
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 399 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000434540; ENST00000434540.1; RP11-550H2.2-001; OTTHUMT00000026986.1; FPKM1_group_865_transcript_1
Alternative gene names: ENSG00000230027; RP11-550H2.2; ENSG00000230027.1; OTTHUMG00000009791.1; AC092813.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -437.0637 non-coding 
CPAT coding probability 1.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ST6GALNAC3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ST6GALNAC3-1:1
3.1 lnc-ST6GALNAC3-1:1
4.0 lnc-ST6GALNAC3-1:1
4.1 lnc-ST6GALNAC3-1:1
5.0 lnc-ST6GALNAC3-1:1
5.1 lnc-ST6GALNAC3-1:1
5.2 lnc-ST6GALNAC3-1:1