Transcript: lnc-ST8SIA1-1:1

Basic information

LNCipedia transcript ID: lnc-ST8SIA1-1:1 
LNCipedia gene ID: lnc-ST8SIA1-1
Ensembl Gene ID: ENSG00000256973
Ensembl Transcript ID: ENST00000543604
Location (hg38): chr12:22460519-22463914
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 738 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000543604; ENST00000543604.1; RP11-359J14.2-001; OTTHUMT00000402276.1; NONHSAT027274
Alternative gene names: ENSG00000256973; RP11-359J14.2; ENSG00000256973.1; OTTHUMG00000169101.1; AC053513.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -52.9051 non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ST8SIA1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ST8SIA1-1:1
3.1 lnc-ST8SIA1-1:1
4.0 lnc-ST8SIA1-1:1
4.1 lnc-ST8SIA1-1:1
5.0 lnc-ST8SIA1-1:1
5.1 lnc-WBP11-60:1
5.2 lnc-ST8SIA1-1:1