Transcript: lnc-ST8SIA2-1:5

Basic information

LNCipedia transcript ID: lnc-ST8SIA2-1:5 
LNCipedia gene ID: lnc-ST8SIA2-1
Ensembl Gene ID: ENSG00000258676
Ensembl Transcript ID: ENST00000625146
Location (hg38): chr15:92598558-92600537
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1980 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567689.1; RP11-386M24.3-002; OTTHUMT00000422099.1; NONHSAT049509; ENST00000625146.1
Alternative gene names: ENSG00000258676.2; RP11-386M24.3; OTTHUMG00000171743.2; ENSG00000258676.4; AC091544.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.3798 non-coding 
CPAT coding probability 11.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ST8SIA2-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C15orf32-1:2
4.0 lnc-C15orf32-1:2
4.1 lnc-C15orf32-1:2
5.0 lnc-C15orf32-1:2
5.1 lnc-TTLL13P-57:4
5.2 lnc-ST8SIA2-1:5