Transcript: lnc-ST8SIA4-2:1

Basic information

LNCipedia transcript ID: lnc-ST8SIA4-2:1 
LNCipedia gene ID: lnc-ST8SIA4-2
Ensembl Gene ID: ENSG00000250806
Ensembl Transcript ID: ENST00000511592
Location (hg38): chr5:100654112-100657970
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 469 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009736; ENST00000511592; ENST00000511592.1; CTC-293G12.1-001; OTTHUMT00000370452.1; NONHSAT103008
Alternative gene names: XLOC_004939; linc-CHD1-1; ENSG00000250806; CTC-293G12.1; ENSG00000250806.2; OTTHUMG00000162806.1; AC027315.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.1593 non-coding 
CPAT coding probability 0.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ST8SIA4-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ST8SIA4-2:1
3.1 lnc-ST8SIA4-2:1
4.0 lnc-ST8SIA4-2:1
4.1 lnc-ST8SIA4-2:1
5.0 lnc-ST8SIA4-2:1
5.1 lnc-ANKRD34B-240:1
5.2 lnc-ST8SIA4-2:1