Transcript: lnc-ST8SIA4-3:11

Basic information

LNCipedia transcript ID: lnc-ST8SIA4-3:11 
LNCipedia gene ID: lnc-ST8SIA4-3
Location (hg38): chr5:100379505-100388254
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 701 bp
Exons: 4
Sources: Broad Institute
Alternative transcript names: TCONS_00009228; NR_027503
Alternative gene names: XLOC_004937; linc-CHD1-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 47.4534 non-coding 
CPAT coding probability 21.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ST8SIA4-3:11 no no no no

Available literature

  1. Yang (2015), Microarray profiling of long non-coding RNA (lncRNA) associated with hypertrophic cardiomyopathy., BMC Cardiovasc Disord


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ST8SIA4-4:1
3.1 lnc-ST8SIA4-4:1
4.0 lnc-ST8SIA4-4:1
4.1 lnc-ST8SIA4-3:11
5.0 lnc-ST8SIA4-3:11
5.1 lnc-ANKRD34B-239:11
5.2 lnc-ST8SIA4-3:11