Transcript: lnc-ST8SIA4-3:2

Basic information

LNCipedia transcript ID: lnc-ST8SIA4-3:2 
LNCipedia gene ID: lnc-ST8SIA4-3
Ensembl Gene ID: ENSG00000247877
Ensembl Transcript ID: ENST00000499025
Location (hg38): chr5:100449754-100535186
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1569 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000499025; ENST00000499025.1; CTD-2001C12.1-002; OTTHUMT00000370444.1; NONHSAT103003; ENST00000499025.5
Alternative gene names: ENSG00000247877; CTD-2001C12.1; ENSG00000247877.2; OTTHUMG00000162801.1; ENSG00000247877.6; AC021086.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.8964 non-coding 
CPAT coding probability 2.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ST8SIA4-3:2 no no no no

Available literature

  1. Yang (2015), Microarray profiling of long non-coding RNA (lncRNA) associated with hypertrophic cardiomyopathy., BMC Cardiovasc Disord


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ST8SIA4-3:2
3.1 lnc-ST8SIA4-3:2
4.0 lnc-ST8SIA4-3:2
4.1 lnc-ST8SIA4-3:2
5.0 lnc-ST8SIA4-3:2
5.1 lnc-ANKRD34B-239:9
5.2 lnc-ST8SIA4-3:2