Transcript: lnc-STAB2-1:11

Basic information

LNCipedia transcript ID: lnc-STAB2-1:11 
LNCipedia gene ID: lnc-STAB2-1
Ensembl Gene ID: ENSG00000257754
Ensembl Transcript ID: ENST00000549448
Location (hg38): chr12:103819610-103822085
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 413 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000549448.1; RP11-650K20.2-001; OTTHUMT00000407099.1; NONHSAT030394
Alternative gene names: ENSG00000257754.1; RP11-650K20.2; OTTHUMG00000170060.1; AC012555.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.6494 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STAB2-1:11 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-650K20.3.1-1:1
4.0 lnc-RP11-650K20.3.1-1:1
4.1 lnc-RP11-650K20.3.1-1:1
5.0 lnc-RP11-650K20.3.1-1:1
5.1 lnc-STAB2-1:10
5.2 lnc-STAB2-1:11