Transcript: lnc-STAT4-1:1

Basic information

LNCipedia transcript ID: lnc-STAT4-1:1 
LNCipedia gene ID: lnc-STAT4-1
Ensembl Gene ID: ENSG00000227542
Ensembl Transcript ID: ENST00000419640
Location (hg38): chr2:191229165-191246172
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 909 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419640; ENST00000419640.1; AC092614.2-001; OTTHUMT00000334772.1; NONHSAT076117
Alternative gene names: ENSG00000227542; AC092614.2; ENSG00000227542.1; OTTHUMG00000154306.1; AC092614.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -210.6731 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STAT4-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STAT4-1:1
3.1 lnc-STAT4-1:1
4.0 lnc-STAT4-1:1
4.1 lnc-STAT4-1:1
5.0 lnc-STAT4-1:1
5.1 lnc-CALCRL-47:2
5.2 lnc-STAT4-1:1