Transcript: lnc-STEAP4-1:1

Basic information

LNCipedia transcript ID: lnc-STEAP4-1:1 
LNCipedia gene ID: lnc-STEAP4-1
Location (hg38): chr7:88270892-88273750
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2859 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000585152.1; CTB-167B5.2-001; OTTHUMT00000446819.1; NONHSAT121869
Alternative gene names: ENSG00000264868.1; CTB-167B5.2; OTTHUMG00000179513.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.0125 non-coding 
CPAT coding probability 3.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STEAP4-1:1 no no no no

Available literature

  1. Zhang (2015), Long non-coding RNA expression profiles of hepatitis C virus-related dysplasia and hepatocellular carcinoma., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-STEAP4-1:1
4.0 lnc-STEAP4-1:1
4.1 lnc-STEAP4-1:1
5.0 lnc-STEAP4-1:1
5.1 lnc-PEX1-53:1
5.2 lnc-STEAP4-1:1