Transcript: lnc-STIL-2:4

Basic information

LNCipedia transcript ID: lnc-STIL-2:4 
LNCipedia gene ID: lnc-STIL-2
Ensembl Gene ID: ENSG00000223814
Ensembl Transcript ID: ENST00000438589
Location (hg38): chr1:47761132-47765547
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 407 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000438589; ENST00000438589.1; RP11-543D5.2-001; OTTHUMT00000021840.1; NONHSAT003101
Alternative gene names: ENSG00000223814; RP11-543D5.2; ENSG00000223814.1; OTTHUMG00000007958.1; AL691459.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 1.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STIL-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-543D5.3.1-2:1
3.1 lnc-RP11-543D5.3.1-2:1
4.0 lnc-RP11-543D5.3.1-2:1
4.1 lnc-RP11-543D5.3.1-2:1
5.0 lnc-RP11-543D5.3.1-2:1
5.1 lnc-STIL-2:3
5.2 lnc-STIL-2:4