Transcript: lnc-STMP1-1:1

Basic information

LNCipedia transcript ID: lnc-STMP1-1:1 
LNCipedia gene ID: lnc-STMP1-1
Ensembl Gene ID: ENSG00000224746
Ensembl Transcript ID: ENST00000419211
Location (hg38): chr7:135926455-135932881
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 804 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419211.1; AC015987.1-001; OTTHUMT00000340907.1; NONHSAT123531
Alternative gene names: ENSG00000224746.1; AC015987.1; OTTHUMG00000155616.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.7733 non-coding 
CPAT coding probability 1.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STMP1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC015987.1-1:1
4.0 lnc-AC015987.1-1:1
4.1 lnc-AC015987.1-1:1
5.0 lnc-AC015987.1-1:1
5.1 lnc-TMEM140-12:1
5.2 lnc-STMP1-1:1