Transcript: lnc-STMP1-5:3

Basic information

LNCipedia transcript ID: lnc-STMP1-5:3 
LNCipedia gene ID: lnc-STMP1-5
Location (hg38): chr7:136025761-136084668
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 457 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00013085; ENST00000440744; ENST00000440744.1; AC024084.1-001; OTTHUMT00000340908.1; NONHSAT123539
Alternative gene names: XLOC_006269; linc-CHRM2-3; ENSG00000230649; AC024084.1; ENSG00000230649.1; OTTHUMG00000155617.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -169.2165 non-coding 
CPAT coding probability 0.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STMP1-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC015987.1-2:2
3.1 lnc-AC015987.1-3:2
4.0 lnc-AC015987.1-3:2
4.1 lnc-AC015987.1-3:2
5.0 lnc-AC015987.1-3:2
5.1 lnc-TMEM140-15:3
5.2 lnc-STMP1-5:3