Transcript: lnc-STOML1-3:5

Basic information

LNCipedia transcript ID: lnc-STOML1-3:5 
LNCipedia gene ID: lnc-STOML1-3
Ensembl Gene ID: ENSG00000260624
Ensembl Transcript ID: ENST00000569137
Location (hg38): chr15:73870951-73873366
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 399 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569137.1; RP11-24D15.1-001; OTTHUMT00000420270.1
Alternative gene names: ENSG00000260624.1; RP11-24D15.1; OTTHUMG00000172726.1; AC018943.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.5467 non-coding 
CPAT coding probability 1.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STOML1-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-STOML1-2:1
4.0 lnc-STOML1-2:1
4.1 lnc-STOML1-2:1
5.0 lnc-STOML1-2:1
5.1 lnc-PKM-47:5
5.2 lnc-STOML1-3:5