Transcript: lnc-STPG1-1:2

Basic information

LNCipedia transcript ID: lnc-STPG1-1:2 
LNCipedia gene ID: lnc-STPG1-1
Ensembl Gene ID: ENSG00000232298
Ensembl Transcript ID: ENST00000437965
Location (hg38): chr1:24307556-24321901
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 856 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000437965.1; RP11-10N16.3-002; OTTHUMT00000008410.1; NONHSAT001626
Alternative gene names: ENSG00000232298.1; RP11-10N16.3; OTTHUMG00000003039.1; ENSG00000232298.2; AL138902.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -153.0889 non-coding 
CPAT coding probability 13.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STPG1-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf201-1:2
4.0 lnc-C1orf201-1:2
4.1 lnc-C1orf201-1:2
5.0 lnc-C1orf201-1:2
5.1 lnc-ID3-20:2
5.2 lnc-STPG1-1:2