Transcript: lnc-STPG1-3:1

Basic information

LNCipedia transcript ID: lnc-STPG1-3:1 
LNCipedia gene ID: lnc-STPG1-3
Ensembl Gene ID: ENSG00000264443
Ensembl Transcript ID: ENST00000577528
Location (hg38): chr1:24538802-24556024
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1445 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000577528.1; RP4-594I10.3-001; OTTHUMT00000446336.1
Alternative gene names: ENSG00000264443.1; RP4-594I10.3; OTTHUMG00000179435.1; AL445686.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -158.989 non-coding 
CPAT coding probability 3.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STPG1-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf201-3:1
4.0 lnc-C1orf201-3:1
4.1 lnc-C1orf201-3:1
5.0 lnc-C1orf201-3:1
5.1 lnc-ID3-24:1
5.2 lnc-STPG1-3:1