Transcript: lnc-STPG1-3:4

Basic information

LNCipedia transcript ID: lnc-STPG1-3:4 
LNCipedia gene ID: lnc-STPG1-3
Location (hg38): chr1:24538605-24551953
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1338 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00002307
Alternative gene names: XLOC_000744; linc-C1orf201-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -158.989 non-coding 
CPAT coding probability 10.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STPG1-3:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1orf201-2:2
3.1 lnc-C1orf201-3:3
4.0 lnc-C1orf201-3:3
4.1 lnc-C1orf201-3:3
5.0 lnc-C1orf201-3:3
5.1 lnc-ID3-24:4
5.2 lnc-STPG1-3:4