Transcript: lnc-STPG1-3:5

Basic information

LNCipedia transcript ID: lnc-STPG1-3:5 
LNCipedia gene ID: lnc-STPG1-3
Location (hg38): chr1:24536648-24538881
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 420 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000487; ENST00000445805; ENST00000445805.1; RP4-594I10.2-001; OTTHUMT00000096579.1; NONHSAT001650
Alternative gene names: XLOC_000744; linc-C1orf201-2; ENSG00000231779; RP4-594I10.2; ENSG00000231779.1; OTTHUMG00000040037.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -117.2018 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STPG1-3:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1orf201-2:3
3.1 lnc-C1orf201-3:4
4.0 lnc-C1orf201-3:4
4.1 lnc-C1orf201-3:4
5.0 lnc-C1orf201-3:4
5.1 lnc-ID3-24:5
5.2 lnc-STPG1-3:5