Transcript: lnc-STRA6-1:1

Basic information

LNCipedia transcript ID: lnc-STRA6-1:1 
LNCipedia gene ID: lnc-STRA6-1
Ensembl Gene ID: ENSG00000261543
Ensembl Transcript ID: ENST00000561647
Location (hg38): chr15:74152800-74179226
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 554 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561647.1; RP11-665J16.1-001; OTTHUMT00000421955.1; NONHSAT047208
Alternative gene names: ENSG00000261543.1; RP11-665J16.1; OTTHUMG00000173054.1; AC010931.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.5696 non-coding 
CPAT coding probability 3.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STRA6-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-STRA6-1:1
4.0 lnc-STRA6-1:1
4.1 lnc-STRA6-1:1
5.0 lnc-STRA6-1:1
5.1 lnc-PKM-53:1
5.2 lnc-STRA6-1:1