Transcript: lnc-STUB1-2:3

Basic information

LNCipedia transcript ID: lnc-STUB1-2:3 
LNCipedia gene ID: lnc-STUB1-2
Location (hg38): chr16:690446-692499
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2054 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT051846
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
LGALGTCLGMTR 90.9090909090909% antisense-2
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.3907 non-coding 
CPAT coding probability 68.21% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-STUB1-2:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-STUB1-1:3
4.0 lnc-STUB1-2:3
4.1 lnc-STUB1-2:3
5.0 lnc-STUB1-2:3
5.1 lnc-DNASE1L2-89:3
5.2 lnc-STUB1-2:3