Transcript: lnc-STX10-2:2

Basic information

LNCipedia transcript ID: lnc-STX10-2:2 
LNCipedia gene ID: lnc-STX10-2
Ensembl Gene ID: ENSG00000267598
Ensembl Transcript ID: ENST00000586483
Location (hg38): chr19:13153071-13153712
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 465 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT061340; ENST00000586483.1
Alternative gene names: ENSG00000267598.1; CTC-250I14.6; AC011446.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 164.0407 coding 
CPAT coding probability 6.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-STX10-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-STX10-2:2
4.0 lnc-STX10-2:2
4.1 lnc-STX10-2:2
5.0 lnc-STX10-2:2
5.1 lnc-ZNF443-31:2
5.2 lnc-STX10-2:2