Transcript: lnc-STX2-4:1

Basic information

LNCipedia transcript ID: lnc-STX2-4:1 
LNCipedia gene ID: lnc-STX2-4
Ensembl Gene ID: ENSG00000256064
Ensembl Transcript ID: ENST00000539532
Location (hg38): chr12:130419535-130421019
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 415 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000539532; ENST00000539532.1; RP11-117L5.4-001; OTTHUMT00000399525.1; NONHSAT031971
Alternative gene names: ENSG00000256064; RP11-117L5.4; ENSG00000256064.1; OTTHUMG00000168386.1; AC063926.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.9455 non-coding 
CPAT coding probability 1.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STX2-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STX2-5:1
3.1 lnc-STX2-4:1
4.0 lnc-STX2-4:1
4.1 lnc-STX2-4:1
5.0 lnc-STX2-4:1
5.1 lnc-DDX51-15:1
5.2 lnc-STX2-4:1