Transcript: lnc-STX2-7:1

Basic information

LNCipedia transcript ID: lnc-STX2-7:1 
LNCipedia gene ID: lnc-STX2-7
Ensembl Gene ID: ENSG00000256209
Ensembl Transcript ID: ENST00000535133
Location (hg38): chr12:131469311-131492951
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 493 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000535133; ENST00000535133.1; RP11-897M7.1-003; OTTHUMT00000399228.1; NONHSAT032021
Alternative gene names: ENSG00000256209; RP11-897M7.1; ENSG00000256209.1; OTTHUMG00000168304.1; AC073578.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -126.9389 non-coding 
CPAT coding probability 7.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STX2-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STX2-8:1
3.1 lnc-STX2-7:1
4.0 lnc-STX2-7:1
4.1 lnc-STX2-7:1
5.0 lnc-STX2-7:1
5.1 lnc-DDX51-7:3
5.2 lnc-STX2-7:1