Transcript: lnc-STX4-1:2

Basic information

LNCipedia transcript ID: lnc-STX4-1:2 
LNCipedia gene ID: lnc-STX4-1
Location (hg38): chr16:31041053-31042955
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1417 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000503629; NONHSAT141838
Alternative gene names: ENSG00000249093; AC135050.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -136.5287 non-coding 
CPAT coding probability 5.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STX4-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC135050.1-1:1
3.1 lnc-AC135050.1-2:1
4.0 lnc-STX4-1:2
4.1 lnc-STX4-1:2
5.0 lnc-STX4-1:2
5.1 lnc-ZNF646-4:1
5.2 lnc-STX4-1:2