Transcript: lnc-STX6-6:7

Basic information

LNCipedia transcript ID: lnc-STX6-6:7 
LNCipedia gene ID: lnc-STX6-6
Location (hg38): chr1:181093888-181105215
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 10263 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000084659.1|MICT00000026032.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 12.372 non-coding 
CPAT coding probability 3.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STX6-6:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-STX6-6:7
5.0 lnc-STX6-6:7
5.1 lnc-SH2D1B-199:4
5.2 lnc-STX6-6:7