Transcript: lnc-SULF1-3:4

Basic information

LNCipedia transcript ID: lnc-SULF1-3:4 
LNCipedia gene ID: lnc-SULF1-3
Ensembl Gene ID: ENSG00000246528
Ensembl Transcript ID: ENST00000530194
Location (hg38): chr8:69843299-69854971
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 572 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000530194; ENST00000530194.1; RP11-159H10.3-001; OTTHUMT00000382015.1; NONHSAT127143
Alternative gene names: ENSG00000246528; RP11-159H10.3; ENSG00000246528.2; OTTHUMG00000165122.2; ENSG00000246528.3; AC079089.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -150.5949 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SULF1-3:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SULF1-2:4
3.1 lnc-SULF1-3:4
4.0 lnc-SULF1-3:4
4.1 lnc-SULF1-3:4
5.0 lnc-SULF1-3:4
5.1 lnc-SULF1-3:4
5.2 lnc-SULF1-3:4