Transcript: lnc-SUMF1-8:1

Basic information

LNCipedia transcript ID: lnc-SUMF1-8:1 
LNCipedia gene ID: lnc-SUMF1-8
Location (hg38): chr3:5690543-5699338
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3620 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006403; NONHSAT087667
Alternative gene names: XLOC_003027; linc-SUMF1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.511 non-coding 
CPAT coding probability 17.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SUMF1-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC018816.3.1-6:1
3.1 lnc-AC018816.3.1-7:1
4.0 lnc-AC018816.3.1-7:1
4.1 lnc-AC018816.3.1-7:1
5.0 lnc-AC018816.3.1-7:1
5.1 lnc-PRRT3-35:1
5.2 lnc-SUMF1-8:1