Transcript: lnc-SUMO1-2:1

Basic information

LNCipedia transcript ID: lnc-SUMO1-2:1 
LNCipedia gene ID: lnc-SUMO1-2
Ensembl Gene ID: ENSG00000222035
Ensembl Transcript ID: ENST00000409819
Location (hg38): chr2:202113626-202117058
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3093 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000409819.1; AC079354.3-001; OTTHUMT00000336159.2
Alternative gene names: ENSG00000222035.1; AC079354.3; OTTHUMG00000154578.2; ENSG00000222035.2; ENSG00000222035.3; AC079354.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.7569 non-coding 
CPAT coding probability 4.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SUMO1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SUMO1-2:1
4.0 lnc-SUMO1-2:1
4.1 lnc-SUMO1-2:1
5.0 lnc-SUMO1-2:1
5.1 lnc-HSPD1-69:1
5.2 lnc-SUMO1-2:1