Transcript: lnc-SUPT6H-3:1

Basic information

LNCipedia transcript ID: lnc-SUPT6H-3:1 
LNCipedia gene ID: lnc-SUPT6H-3
Location (hg38): chr17:28608304-28609730
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 742 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000579019.1; RP11-192H23.6-001; OTTHUMT00000445825.1
Alternative gene names: ENSG00000265287.1; RP11-192H23.6; OTTHUMG00000179343.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.228 non-coding 
CPAT coding probability 4.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SUPT6H-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SUPT6H-3:1
4.0 lnc-SUPT6H-3:1
4.1 lnc-SUPT6H-3:1
5.0 lnc-SUPT6H-3:1
5.1 lnc-PIPOX-26:2
5.2 lnc-SUPT6H-3:1