Transcript: lnc-SUPT6H-5:3

Basic information

LNCipedia transcript ID: lnc-SUPT6H-5:3 
LNCipedia gene ID: lnc-SUPT6H-5
Location (hg38): chr17:28645343-28646947
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 816 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000031026.1|ENCT00000173441.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -216.5374 non-coding 
CPAT coding probability 0.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SUPT6H-5:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SUPT6H-5:3
5.0 lnc-SUPT6H-5:3
5.1 lnc-PIPOX-20:3
5.2 lnc-SUPT6H-5:3