Transcript: lnc-SUSD1-1:4

Basic information

LNCipedia transcript ID: lnc-SUSD1-1:4 
LNCipedia gene ID: lnc-SUSD1-1
Ensembl Gene ID: ENSG00000259953
Ensembl Transcript ID: ENST00000568421
Location (hg38): chr9:112033394-112036310
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2917 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568421.1; RP11-4O1.2-001; OTTHUMT00000430549.1; NONHSAT133998
Alternative gene names: ENSG00000259953.1; RP11-4O1.2; OTTHUMG00000175583.1; AL138756.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.1786 non-coding 
CPAT coding probability 1.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SUSD1-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SUSD1-1:4
4.0 lnc-SUSD1-1:4
4.1 lnc-SUSD1-1:4
5.0 lnc-SUSD1-1:4
5.1 lnc-SLC46A2-34:6
5.2 lnc-SUSD1-1:4