Transcript: lnc-SV2B-1:8

Basic information

LNCipedia transcript ID: lnc-SV2B-1:8 
LNCipedia gene ID: lnc-SV2B-1
Location (hg38): chr15:91612084-91637078
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 386 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023507; NONHSAT048503
Alternative gene names: XLOC_011354; linc-SLCO3A1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -473.546 non-coding 
CPAT coding probability 4.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SV2B-1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLCO3A1-1:1
3.1 lnc-SLCO3A1-1:1
4.0 lnc-SLCO3A1-1:1
4.1 lnc-SV2B-1:8
5.0 lnc-SV2B-1:8
5.1 lnc-TTLL13P-47:8
5.2 lnc-SV2B-1:8