Transcript: lnc-SYCP2-1:3

Basic information

LNCipedia transcript ID: lnc-SYCP2-1:3 
LNCipedia gene ID: lnc-SYCP2-1
RefSeq ID: NR_040513
Location (hg38): chr20:59626464-59628289
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 678 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT080624; NR_040513; NR_040513.1
Alternative gene names: LOC100506384


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.2028 non-coding 
CPAT coding probability 1.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYCP2-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SYCP2-1:3
4.0 lnc-SYCP2-1:3
4.1 lnc-SYCP2-1:3
5.0 lnc-SYCP2-1:3
5.1 lnc-SPATA2-126:2
5.2 lnc-SYCP2-1:3