Transcript: lnc-SYK-6:1

Basic information

LNCipedia transcript ID: lnc-SYK-6:1 
LNCipedia gene ID: lnc-SYK-6
Location (hg38): chr9:91424322-91427147
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1249 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00016069; NONHSAT133135
Alternative gene names: XLOC_007456; linc-CENPP-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.3444 non-coding 
CPAT coding probability 4.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYK-6:1 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SYK-5:1
3.1 lnc-SYK-6:1
4.0 lnc-SYK-6:1
4.1 lnc-SYK-6:1
5.0 lnc-SYK-6:1
5.1 lnc-FAM120A-76:6
5.2 lnc-SYK-6:1