Transcript: lnc-SYK-6:4

Basic information

LNCipedia transcript ID: lnc-SYK-6:4 
LNCipedia gene ID: lnc-SYK-6
Location (hg38): chr9:91424033-91424379
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 347 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000233081.1|FTMT23600006059.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYK-6:4 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SYK-6:4
5.0 lnc-SYK-6:4
5.1 lnc-FAM120A-76:1
5.2 lnc-SYK-6:4